{"id":122,"date":"2019-12-04T11:42:44","date_gmt":"2019-12-04T11:42:44","guid":{"rendered":"https:\/\/alfa.webs.upv.es\/?page_id=122"},"modified":"2026-01-09T19:31:33","modified_gmt":"2026-01-09T19:31:33","slug":"publications","status":"publish","type":"page","link":"https:\/\/alfa.webs.upv.es\/index.php\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n<p><strong>(Only journal publications including Springer&#8217;s Lecture Notes from 2008 on)<\/strong><\/p>\n\n\n<h5><span style=\"color: #800000;\">2026<\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Enhancing P Systems for Complex Biological Simulations.<\/span> Aya Allah Elsayed,Raquel Cepri\u00e1n, Ahmed Ibrahem Hafez, Carlos Llorens and Jos\u00e9 M. Sempere. <span style=\"color: #ff0000;\">Applied Sciences<\/span> 16, No. 2, 705. 2026.<\/li>\n<li><span style=\"color: #000080;\">Inteligencia artificial generativa: los modelos fundacionales. Procesamiento del lenguaje natural y modelos de lenguaje grandes<\/span>.\u00a0J. Mora-Delgado, L. Ramos-Ruperto, M.J. Pardilla, M.A. Sicilia, A. Rodr\u00edguez-Gonz\u00e1lez, J.M. Sempere, R. Puchades. <span style=\"color: #ff0000;\">Revista Cl\u00ednica Espa\u00f1ola<\/span> Vol. 226, Issue 1, 502413. 2026<\/li>\n<li><span style=\"color: #333399;\">Machine learning y deep learning en medicina interna: desmitificando conceptos.<\/span> L. Ramos-Ruperto, J. Mora-Delgado, A. Rodr\u00edguez-Gonz\u00e1lez, M.A. Sicilia, M.J. Pardilla, J.M. Sempere, R. Puchades. <span style=\"color: #ff0000;\">Revista Cl\u00ednica Espa\u00f1ola<\/span> Vol. 226, Issue 1, 502412. 2026.<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\">2025<\/span><\/h5>\n<ul class=\"wp-block-list\">\n<li><span style=\"color: #000080;\">On Some Relationships Between P Colonies and Computing by Plasmids. <\/span>(2025) Jos\u00e9 M. Sempere. Languages of Cooperation and Communication. <span style=\"color: #ff0000;\">LNCS Vol. 15840<\/span>, pp 252-266. M.D. Jim\u00e9nez L\u00f3pez, G. Vaszil (eds.) Springer.<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\">2024<\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Practical Design and Implementation of Virtual Chatbot Assistants for Bioinformatics Based ib a NLU Open Framework. <span style=\"color: #000000;\">(2024)<\/span><\/span> A.A. Elsayed A.I. Hafez, R. Cepri\u00e1n, G. Mart\u00ednez, A. Granados, B. Soriano, C. Llorens, J.M. Sempere. <span style=\"color: #ff0000;\">Big Data and Cognitive Computing <\/span>\u00a08(11):163.<\/li>\n<li><span style=\"color: #000080;\">Membrane computing simulation of sexually transmitted bacterial infections in hotspots of individuals with various risk behaviors.<\/span> (2024) Marcelino Campos, Juan Carlos Gal\u00e1n, Mario Rodr\u00edguez-Dom\u00ednguez, Jos\u00e9 M. Sempere, Carlos Llorens, Fernando Baquero.\u00a0 <span style=\"color: #ff0000;\">Microbiology Spectrum<\/span> Vol.12 Issue 2\u00a0 e02728-23<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\">2023<\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Modeling Markov sources and hidden Markov models by P systems.<\/span> (2023) Jos\u00e9 M. Sempere. <span style=\"color: #ff0000;\">Journal of Membrane Computing<\/span> Vol. 5 Issue 3, pp 161-169.<\/li>\n<li><span style=\"color: #000080;\">A Solidity implementation of TAVS<\/span> (2023) A. Larriba-Flor, D. L\u00f3pez Rodr\u00edguez.\u00a0 <span style=\"color: #ff0000;\">Frontiers in Block Chain<\/span>. Vol. 6:1105119.<\/li>\n<li><span style=\"color: #000080;\">Applications and Server-Side Docker for Management of RNASeq and\/or VariantSeq Workflows and Pipelines of the GPRO Suite. <span style=\"color: #000000;\">(2023)<\/span><\/span>\u00a0A.I. Hafez, B. Soriano, A.A. Elsayed, R. Futami, R. Ceprian, R. Ramos-Ruiz, G. Martinez, F.J. Roig, M.A. Torres-Font, F. Naya-Catala, J.A. Calduch-Giner, L. Trilla-Fuertes, A. Gamez-Pozo, V. Arnau, J.M. Sempere-Luna, J. Perez-Sanchez, T. Gabaldon, C. Llorens. <span style=\"color: #ff0000;\">Genes<\/span> 14(2):267.<\/li>\n<li><span style=\"color: #000080;\">How to grant anonymous access<\/span> (2023). Antonio M. Larriba, Dami\u00e1n L\u00f3pez.<span style=\"color: #ff0000;\"> IEEE Transactions on Information Forensics and Security<\/span> Vol. 18. pp 613-625.<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\">2022<\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">SUVS: Secure Unencrypted Voting Scheme<\/span> (2022) Antonio <span class=\"busqueda-3\">Larriba-Flor,\u00a0 Dami\u00e1n <\/span><span class=\"busqueda-3\">L\u00f3pez Rodr\u00edguez<\/span>.\u00a0<span class=\"busqueda-2\"><span style=\"color: #ff0000;\">Informatica<\/span> <\/span>Vol. 33 Issue 4, pp. 749-769.\u00a0<\/li>\n<li><span class=\"has-inline-color has-blue-color\" style=\"color: #000080;\">Simulating the efficacy of vaccines on the epidemiological dynamics of SARS-CoV-2 in a membrane computing model <\/span><span class=\"has-inline-color has-blue-color\" style=\"color: #000000;\">(2022)<\/span><span class=\"has-inline-color has-blue-color\" style=\"color: #000080;\"> <span style=\"color: #000000;\">Marcelino Campos, Jos\u00e9 M Sempere, Juan C Gal\u00e1n, Andr\u00e9s Moya, Rafael Cant\u00f3n, Carlos Llorens, Fernando Baquero.<\/span> <span style=\"color: #ff0000;\">microLife<\/span> <span style=\"color: #000000;\">Vol<\/span><\/span><span style=\"color: #000000;\">. 3, uqac018.<\/span><\/li>\n<li><span style=\"color: #000080;\">Simulating epidemics by membrane computing<\/span>\u00a0(2022)\u00a0<span style=\"color: #000000;\"> Jos\u00e9 M. Sempere, Marcelino Campos. <span style=\"color: #ff0000;\">Bulletin of The International Membrance Computing Society<\/span>, Number 13, pp 91-97.<\/span><\/li>\n<li><span class=\"has-inline-color has-blue-color\" style=\"color: #000080;\">Generating networks of genetic processors <\/span><span class=\"has-inline-color has-blue-color\"><span style=\"color: #000000;\">(2022)<\/span> <\/span>Marcelino Campos &amp;\u00a0 Jos\u00e9 M. Sempere. <span style=\"color: #ff0000;\">Genetic Programming and Evolvable Machines<\/span>\u00a0 Vol. 23,\u00a0 Issue 1, pp 133-155.<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\">2021<\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">P systems in the time of COVID-19<\/span>\u00a0(2021) Fernando Baquero, Marcelino Campos, Carlos Llorens &amp; Jos\u00e9 M. Sempere. <span style=\"color: #ff0000;\">Journal of Membrane Computing<\/span> Vol. 3, Issue 4, pp 246-257.<\/li>\n<li><span class=\"has-inline-color has-blue-color\" style=\"color: #000080;\">Simulating the impact of non-pharmaceutical interventions limiting transmission in COVID-19 epidemics using a membrane computing model\u00a0<span style=\"color: #000000;\">(2021)<\/span><\/span> M.Campos, J.M. Sempere, J.C. Gal\u00e1n, A. Moya, C. Llorens, C. de los \u00c1ngeles, F. Baquero-Artigao, R. Cant\u00f3n, F. Baquero. <span style=\"color: #ff0000;\">microLife<\/span> Vol.2, uqab011.<\/li>\n<li><span class=\"has-inline-color has-blue-color\" style=\"color: #000080;\" data-rich-text-format-boundary=\"true\">Distributed Trust, a Blockchain Election Scheme <\/span>\u00a0(2021) Antonio M. Larriba , Aleix Cerd\u00e0 i Cuc\u00f3, Jos\u00e9 M. Sempere and Dami\u00e1n L\u00f3pez. <span style=\"color: #ff0000;\">Informatica<\/span> 32(2), pp. 321\u2013355.<\/li>\n<li><span style=\"color: #000080;\">On the Languages Accepted by Watson-Crick Finite Automata with Delays <\/span>\u00a0(2021).\u00a0 \u00a0Jos\u00e9 M. Sempere. <span style=\"color: #ff0000;\">Mathematics <\/span>\u00a09(8), 813.\u00a0<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\">2020<\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">A two authorities electronic vote scheme <\/span>\u00a0(2020).\u00a0 Antonio Larriba, Jos\u00e9 M. Sempere, Dami\u00e1n L\u00f3pez. <span style=\"color: #ff0000;\">Computers and Security <\/span>\u00a0Vol. 97, October 2020, 101940.<\/li>\n<li><span style=\"color: #000080;\">Simulating the Influence of Conjugative-Plasmid Kinetic Values on the Multilevel Dynamics of Antimicrobial Resistance in a Membrane Computing Model<\/span> (2020).\u00a0 Marcelino Campos, \u00c1lvaro San Mill\u00e1n, Jos\u00e9 M. Sempere, Val F. Lanza, Teresa M. Coque, Carlos Llorens, Fernando Baquero. <span style=\"color: #ff0000;\">Antimicrobial Agents and Chemotherapy<\/span> <span style=\"color: #ff0000;\">\u00a0<\/span>August 2020, 64(8) e00593-20.<\/li>\n<li><span style=\"color: #000080;\">On Compensation Loops in Genomic Duplications<\/span> (2020). Jos\u00e9 M. Sempere. <span style=\"color: #ff0000;\">International Journal of Foundations of Computer Science <\/span>\u00a0Vol. 31, No.1, pp 133-142.<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\">2019<\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Modeling of Decision Trees Through P Systems<\/span> (2019). Jos\u00e9 M. Sempere. <span style=\"color: #ff0000;\">New Generation Computing<\/span> 37, pp 325-337.<\/li>\n<li><span style=\"color: #000080;\">Simulating Multilevel Dynamics of Antimicrobial Resistance in a Membrane Computing Model<\/span> (2019). Marcelino Campos, Rafael Capilla, Fernando Naya, Ricardo Futami, Teresa Coque, Andr\u00e9s Moya, Val Fernandez-Lanza, Rafael Cant\u00f3n, Jos\u00e9 M. Sempere, Carlos Llorens, Fernando Baquero. <span style=\"color: #ff0000;\">mBio<\/span> Jan 2019, 10 (1) e02460-18.<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\">2018<\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Families of Languages Encoded by SN P Systems<\/span> (2018). Jos\u00e9 M. Sempere. In Proceedings of the 18th International Conference on Membrane Computing (CMC 2017) (Bradford, UK). Marian Gheorghe, Grzegorz Rozenberg, Arto Salomaa, Claudio Zandron (eds.), <span style=\"color: #ff0000;\">LNCS Vol.10725<\/span>, pp 262-269, Springer.<\/li>\n<li><span style=\"color: #000080;\">A\u00a0Model of Antibiotic Resistance Evolution Dynamics Through P Systems with Active Membranes and Communication Rules<\/span> (2018). Fernando Baquero, Marcelino Campos, Carlos Llorens, Jos\u00e9 M. Sempere. In Enjoying Natural Computing. Essays Dedicated to Mario de Jes\u00fas P\u00e9rez-Jim\u00e9nez on the Occasion of His 70th Birthday. Carmen Graciani, Agust\u00edn Riscos-N\u00fa\u00f1ez, Gheorghe P\u0103un, Grzegorz Rozenberg (eds.), <span style=\"color: #ff0000;\">LNCS Vol.11270<\/span>, pp 33-44, Springer.<\/li>\n<li><span style=\"color: #000080;\">Grammatical inference of directed acyclic graph languages with polynomial time complexity<\/span> (2018). Javier Gallego, Dami\u00e1n L\u00f3pez, Jorge Calera-Rubio.<span style=\"color: #ff0000;\"> Journal of Computer and System Science<\/span> 95 pp 19-34.<\/li>\n<\/ul>\n<h5><strong><span style=\"color: #993300;\">2017<\/span><\/strong><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Networks of Genetic Processors: From Universality to a Formal Language Characterization<\/span> (2017). Jos\u00e9 M. Sempere. In 15th International Conference on Automata and Formal Languages (AFL 2017) (Debrecen, HU). <span style=\"color: #ff0000;\">Electronic Proceedings in Theoretical Computer Science<\/span>, EPTCS (E. Csuhaj-Varj\u00fa, P. D\u00f6m\u00f6si, Gy. Vaszil, eds.) Vol. 252, pp 7-8.<\/li>\n<li><span style=\"color: #000080;\">A View of P Systems from Information Theory <\/span>(2017). Jos\u00e9 M. Sempere. In Proceedings of the 17th International Conference on Membrane Computing (CMC 2016) (Milano, Italy). Alberto Leporati, Grzegorz Rozenberg, Arto Salomaa, Claudio Zandron (eds.),<span style=\"color: #ff0000;\"> LNCS Vol.10105<\/span>, pp 352-362, Springer.\u00a0<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\"><strong>2016<\/strong><\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Families of Languages Associated with SN P Systems: Preliminary Ideas, Open Problems <span style=\"color: #000000;\">(2016)<\/span><\/span>. Gh. P\u0103un, Jos\u00e9 M. Sempere. <span style=\"color: #ff0000;\">Bulletin of The International Membrane Computing Society<\/span>, Number 2, pp 161-164.<\/li>\n<li><span style=\"color: #000080;\">Minimal consistent DFA revisited<\/span> (2016).\u00a0 Manuel V\u00e1zquez de Parga, Pedro Garc\u00eda, Dami\u00e1n L\u00f3pez. <span style=\"color: #ff0000;\">Theoretical Computer Science<\/span> Vol. 647, pp 43-49.\u00a0<\/li>\n<li><span style=\"color: #000080;\">A sufficient condition to polynomially compute a minimum separating DFA<\/span> (2016). Manuel V\u00e1zquez de Parga, Pedro Garc\u00eda, Dami\u00e1n L\u00f3pez. <span style=\"color: #ff0000;\">Information Sciences<\/span> Vol. 370-371, pp 204-220.\u00a0<\/li>\n<li><span style=\"color: #000080;\">Topics in Grammatical Inference<\/span> (2016). Jeffrey Heinz, Jos\u00e9 M. Sempere (eds.) <span style=\"color: #ff0000;\">Springer<\/span>. ISBN: 978-3-662-48393-0.<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\"><strong>2015<\/strong><\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Membrane Computing. Revised Selected Papers of the 16th International Conference CMC2015<\/span> (2015) Grzegorz. Rozenberg, Arto Salomaa, Jos\u00e9 M. Sempere, Claudio Zandron (eds.) LNCS Vol. 9504. <span style=\"color: #ff0000;\">Springer<\/span>. ISBN: 978-3-319-28474-3.<\/li>\n<li><span style=\"color: #000080;\">A membrane computing simulator of trans-hierarchical antibiotic resistance evolution dynamics in nested ecological compartments (ARES)<\/span> (2015). Marcelino Campos, Carlos Llorens, Jos\u00e9 M. Sempere, Ricardo Futami, Irene Rodr\u00edguez, Purificaci\u00f3n Carrasco, Rafael Capilla, Amparo Latorre, Teresa M. Coque, Andr\u00e9s Moya and Fernando Baquero. <span style=\"color: #ff0000;\">Biology Direct<\/span> Vol. 10(41).<\/li>\n<li><span style=\"color: #000080;\">A Split-Based Incremental Deterministic Automata Minimization Algorithm<\/span> (2015). Pedro Garc\u00eda, Manuel V\u00e1zquez de Parga, Jairo A. Velasco and Dami\u00e1n L\u00f3pez. <span style=\"color: #ff0000;\">Theory of Computing Systems<\/span> Vol. 57 pp 319-336.<\/li>\n<li><span style=\"color: #000080;\">DFA minimization: Double reversal versus split minimization algorithms<\/span> (2015). Pedro Garc\u00eda, Dami\u00e1n L\u00f3pez and Manuel V\u00e1zquez de Parga. <span style=\"color: #ff0000;\">Theoretical Computer Science<\/span> Vol. 583 pp 78-85.<\/li>\n<\/ul>\n<h5><strong><span style=\"color: #993300;\">2014<\/span><\/strong><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Efficient Deterministic Finite Automata Split-Minimization Derived from Brzozowski&#8217;s Algorithm<\/span> (2014). Pedro Garc\u00eda, Dami\u00e1n L\u00f3pez and Manuel V\u00e1zquez de Parga. <span style=\"color: #ff0000;\">International Journal of Foundations of Computer Science<\/span> Vol.25, No.6 pp 679-696.\u00a0<\/li>\n<\/ul>\n<h5><strong><span style=\"color: #993300;\">2013<\/span><\/strong><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Regular languages and partial commutations<\/span> (2013). Antonio Cano, Giovanna Guaiana, Jean-\u00c9ric Pin. <span style=\"color: #ff0000;\">Information and Computation<\/span> Vol. 230, pp 76-96.\u00a0<\/li>\n<li><span style=\"color: #000080;\">Solving Combinatorial Problems with Networks of Genetic Processors<\/span> (2013). Marcelino Campos, Jos\u00e9 M. Sempere. <span style=\"color: #ff0000;\">International Journal &#8220;Information Technologies and Knowledge&#8221;<\/span> Vol.7 No. 1, pp 65-71.<\/li>\n<li><span style=\"color: #000080;\">A polynomial double reversal minimization algorithm for deterministic finite automata<\/span> (2013). Manuel V\u00e1zquez de Parga, Pedro Garc\u00eda, Dami\u00e1n L\u00f3pez. <span style=\"color: #ff0000;\">Theoretical Computer Science<\/span> Vol. 487, pp 17-22.\u00a0<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\"><strong>2012<\/strong><\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Networks of Bio-inspired Processors<\/span> (2012). Fernando Arroyo Montoro, Juan Castellanos, Victor Mitrana, Eugenio Santos, Jos\u00e9 M. Sempere. <span style=\"color: #ff0000;\">Triangle<\/span> Vol. 7, pp 3-22.<\/li>\n<li><span style=\"color: #000080;\">Accepting Networks of Genetic Processors are computationally complete<\/span> (2012). Marcelino Campos, Jos\u00e9 M. Sempere. <span style=\"color: #ff0000;\">Theoretical Computer Science<\/span> Vol. 456, pp 18-29.<\/li>\n<li><span style=\"color: #000080;\">Polynomial characteristic sets for DFA identification<\/span> (2012). Pedro Garc\u00eda, Dami\u00e1n L\u00f3pez, Manuel V\u00e1zquez de Parga. <span style=\"color: #ff0000;\">Theoretical Computer Science<\/span> Vol. 448, pp 41-46.\u00a0<\/li>\n<li><span style=\"color: #000080;\">Structural Graph Extraction from Images<\/span> (2012). Antonio Javier Gallego S\u00e1nchez, Jorge Calera Rubio, Dami\u00e1n L\u00f3pez. Proceedings of the 9th International Conference on Distributed Computing and Artificial Intelligence. S. Omatu, J.F. De Paz Santana, S. Rodr\u00edguez Gonz\u00e1lez, J.M. Molina, A.M. Bernardos, J.M. Corchado Rodr\u00edguez, (eds.) <span style=\"color: #ff0000;\">Series of Advances in Intelligent and Soft Computing<\/span>\u00a0Vol. 151, pp 717-724, Springer-Verlag.<\/li>\n<\/ul>\n<h5><strong><span style=\"color: #993300;\">2011<\/span><\/strong><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">HyRPNI Algorithm and an Application to Bioinformatics<\/span> (2011). Gloria In\u00e9s \u00c1lvarez, Jorge Hern\u00e1n Victoria, Enrique Bravo, Pedro Garc\u00eda. <span style=\"color: #ff0000;\">Revista de Ingenier\u00eda<\/span> 33 pp 44-52; Enero\/Junio.<\/li>\n<li><span style=\"color: #000080;\">GyDB mobilomics: LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome<\/span> (2011).\u00a0 P. Bernet, Alfonso Mu\u00f1oz Pomer, Laura Dom\u00ednguez-Escrib\u00e1, Laura Covelli, Luc\u00eda Bernad, Sukanya Ramasamy, Ricardo Futami, Jose M. Sempere, Andr\u00e9s Moya and Carlos Llorens. <span style=\"color: #ff0000;\">Mobile Genetic Elements<\/span> 1:2, 97-102; July\/August.<\/li>\n<li><span style=\"color: #000080;\">From regular expressions to smaller NFAs<\/span> (2011). Pedro Garc\u00eda, Dami\u00e1n L\u00f3pez, Jos\u00e9 Ruiz and Gloria I. \u00c1lvarez. <span style=\"color: #ff0000;\">Theoretical Computer Science<\/span> Vol. 412, Issue 41, pp 5802-5807.<\/li>\n<li><span style=\"color: #000080;\">Simulating Accepting Networks of Evolutionary Processors with Filtered Connections by Accepting Evolutionary P Systems<\/span> (2011). Juan Castellanos, Victor Mitrana, Eugenio Santos, Jos\u00e9 M. Sempere. Proceedings of the 4th International Work-Conference on the Interplay between Natural and Artificial Computation (IWINAC 2011).<span style=\"color: #ff0000;\"> LNCS Vol.6686<\/span>, pp 295-302, Springer-Verlag.<\/li>\n<li><span style=\"color: #000080;\">The Spanish Network on Biomolecular and Biocellular Computing: Bio-inspired Natural Computing in Spain<\/span> (2011). Mario de J. P\u00e9rez-Jim\u00e9nez, Alfonso Ortega de la Puente, Jos\u00e9 M. Sempere.<span style=\"color: #ff0000;\"> ERCIM News<\/span>, No. 85, pp 25.<\/li>\n<li><span style=\"color: #000080;\">The Gypsy Database (GyDB) of mobile genetic elements: release 2.0<\/span> (2011).\u00a0 Llorens, Ricardo Futami, Laura Covelli, Laura Dominguez-Escriba, Jose M. Viu, Daniel Tamarit, Jose Aguilar-Rodriguez, Miguel Vicente-Ripolles, Gonzalo Fuster, Guillermo P. Bernet, Florian Maumus, Alfonso Mu\u00f1oz-Pomer, Jos\u00e9 M. Sempere, Amparo Latorre, Andres Moya. <span style=\"color: #ff0000;\">Nucleic Acids Research<\/span> Vol. 39, Database issue, D70-D74.<\/li>\n<li><span style=\"color: #000080;\">Complexity-preserving simulations among three variants of accepting networks of evolutionary processors <\/span>(2011). Paolo Bottoni, Anna Labella, Florin Manea, Victor Mitrana, Ion Petre, Jose M. Sempere. <span style=\"color: #ff0000;\">Natural Computing<\/span>, Vol. 10, No. 1, pp 429-445.<\/li>\n<li><span style=\"color: #000080;\">Filter Position in Networks of Substitution Processors does not matter<\/span> (2011). F. Arroyo, J. Castellanos, V. Mitrana, E. Santos, J.M. Sempere. <span style=\"color: #ff0000;\">International Journal of Foundations of Computer Science<\/span>, Vol. 22, No. 1, pp 155-165.<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\"><strong>2010<\/strong><\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">Grammatical Inference: Theoretical Results and Applications. Proceedings of the 10th International Colloquium on Grammatical Inference<\/span> (2010). Jos\u00e9 M. Sempere, Pedro Garc\u00eda (eds.) LNAI Vol. 6339<span style=\"color: #ff0000;\"> Springer<\/span>. ISBN: 3-642-15487-5.<\/li>\n<li><span style=\"color: #000080;\">A Non-deterministic Grammar Inference Algorithm Applied to the Cleavage Site Prediction Problem in Bioinformatics<\/span> (2010).Gloria In\u00e9s \u00c1lvarez, Jorge Hern\u00e1n Victoria, Enrique Bravo, Pedro Garc\u00eda. Proceedings of the 10th International Colloquium on Grammatical Inference (ICGI 2010). <span style=\"color: #ff0000;\">LNAI Vol. 6339<\/span>, pp 267-270, Springer.<\/li>\n<li><span style=\"color: #000080;\">Transducer Inference by Assembling Specific Languages<\/span> (2010).\u00a0 Piedachu Peris, Dami\u00e1n L\u00f3pez. Proceedings of the 10th International Colloquium on Grammatical Inference (ICGI 2010) <span style=\"color: #ff0000;\">LNAI Vol. 6339<\/span>, pp 178-188, Springer.\u00a0<\/li>\n<li><span style=\"color: #000080;\">Learning Automata Teams<\/span> (2010). Pedro Garc\u00eda, Manuel V\u00e1zquez de Parga, Dami\u00e1n L\u00f3pez, Jos\u00e9 Ruiz. Proceedings of the 10th International Colloquium on Grammatical Inference (ICGI 2010). <span style=\"color: #ff0000;\">LNAI Vol. 6339<\/span>, pp 52-65, Springer.\u00a0<\/li>\n<li><span style=\"color: #000080;\">Inferring Regular Trace Languages from Positive and Negative Samples<\/span> (2010). Antonio Cano. Proceedings of the 10th International Colloquium on Grammatical Inference (ICGI 2010). <span style=\"color: #ff0000;\">LNAI Vol. 6339<\/span>, pp 11-23, Springer.<\/li>\n<li><span style=\"color: #000080;\">Dogmatic P Systems<\/span> (2010) Jos\u00e9 M. Sempere.\u00a0 Eigth Brainstorming Week on Membrane Computing, pp 291-300, <span style=\"color: #ff0000;\">F\u00e9nix Editora<\/span>.\u00a0<\/li>\n<li><span style=\"color: #000080;\">Antioxidant N-Acetyl-Cysteine Protects Retinal Pigmented Epithelial Cells from Long-Term Hypoxia Changes in Gene Expression<\/span> (2010). Guillermo Gerona, Dami\u00e1n L\u00f3pez, Mercedes Palmero, Victoria Maneu.<span style=\"color: #ff0000;\"> Journal of Ocular Pharmacology and Therapeutics<\/span>. August 2010, Vol. 26, No. 4, pp 309-314.\u00a0<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\"><strong>2009<\/strong><\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">On locally reversible languages (2009).<span style=\"color: #000000;\"> P. Garc\u00eda, M. V\u00e1zquez de Parga, A. Cano, D. L\u00f3pez.<\/span> <span style=\"color: #ff0000;\">Theoretical Computer Science<span style=\"color: #000000;\">.<\/span><\/span><span style=\"color: #000000;\"> Vol. 410, Issues 47-49, pp 4961-4974<\/span><\/span><span style=\"color: #000000;\">.<\/span><\/li>\n<li><span style=\"color: #000080;\">Networks of Evolutionary Picture Processors With Filtered Connections<\/span> (2009).\u00a0 Paolo Bottoni, Anna Labella, Florin Manea, Victor Mitrana, Jos\u00e9 M. Sempere. Proceedings of the\u00a0 8th International Conference on Unconventional Computation (UC09). <span style=\"color: #ff0000;\">LNCS Vol. 5715<\/span>, pp 70-84. Springer.<\/li>\n<li><span style=\"color: #000080;\">Filter Position in Networks of Evolutionary Processors Does Not Matter: A Direct Proof <span style=\"color: #000000;\">(2009)<\/span><\/span>. Paolo Bottoni, Anna Labella, Florin Manea, Victor Mitrana, Jos\u00e9 M. Sempere. Proceedings of the 15th International Meeting on DNA Computing and Molecular Programming (DNA15). <span style=\"color: #ff0000;\">LNCS Vol. 5877<\/span>, pp 1-11. Springer.<\/li>\n<li><span style=\"color: #000080;\">Some Remarks on Superposition Based on Watson-Crick-like Complementarity<\/span> (2009) Florin Manea, Victor Mitrana, Jos\u00e9 M. Sempere. Proceedings of the 13th International Conference on Developments in Language Theory (DLT 2009).\u00a0<span style=\"color: #ff0000;\">LNCS Vol. 5583<\/span>, pp 372-383. Springer.<\/li>\n<\/ul>\n<h5><span style=\"color: #993300;\"><strong>2008<\/strong><\/span><\/h5>\n<ul>\n<li><span style=\"color: #000080;\">IgTM: An algorithm to predict transmembrane domains and topology in proteins<span style=\"color: #000000;\"> (2008).\u00a0 P. Peris, Dami\u00e1n L\u00f3pez and Marcelino Campos.<\/span> <span style=\"color: #ff0000;\">BMC Bioinformatics<\/span> 9:367.<\/span><\/li>\n<li><span style=\"color: #000080;\">Universal automata and NFA learning<\/span> (2008). Pedro Garc\u00eda, Manuel V\u00e1zquez de Parga, Gloria I. \u00c1lvarez and Jos\u00e9 Ruiz. <span style=\"color: #ff0000;\">Theoretical Computer Science<\/span> Vol. 407, Issues 1-3, pp 192-202.<\/li>\n<li><span style=\"color: #000080;\">On the efficient construction of quasi-reversible automata for reversible languages<\/span> (2008). Pedro Garc\u00eda, Manuel V\u00e1zquez de Parga, Dami\u00e1n L\u00f3pez. <span style=\"color: #ff0000;\">Information Processing Letters<\/span>, Vol. 107 Issue 1, pp 13-17.<\/li>\n<li><span style=\"color: #000080;\">When Does Partial Commutative Closure Preserve Regularity ?<\/span> (2008) Antonio Cano G\u00f3mez, Giovanna Guaiana, Jean-Eric Pin. Proceedings of the 35th International Colloquium on Automata, Languages and Programming (ICALP 2008). \u00a0<span style=\"color: #ff0000;\">LNCS Vol. 5126<\/span> pp. 209-220. Springer.<\/li>\n<li><span style=\"color: #000080;\">A Robust Class of Regular Languages<\/span> (2008). Antonio Cano G\u00f3mez, Jean-Eric Pin. Proceedings of the 33rd International Symposium on Mathematical Foundations of Computer Science (MFCS 2008) \u00a0<span style=\"color: #ff0000;\">LNCS Vol. 5162<\/span> pp. 36-51. Springer.<\/li>\n<li><span style=\"color: #000080;\">Learning Context-Sensitive Languages from Linear Structural Information<\/span> (2008).\u00a0 Jos\u00e9 M. Sempere. Proceedings of the 9th International Colloquium on Grammatical Inference (ICGI 2008) <span style=\"color: #ff0000;\">LNAI Vol. 5278<\/span>\u00a0 pp. 175-186. Springer.<\/li>\n<li><span style=\"color: #000080;\">Learning Commutative Regular Languages<\/span> (2008). Antonio Cano G\u00f3mez, Gloria I. \u00c1lvarez. Proceedings of the 9th International Colloquium on Grammatical Inference (ICGI 2008).\u00a0<span style=\"color: #ff0000;\">LNAI Vol. 5278<\/span>\u00a0 pp. 71-83. Springer.<\/li>\n<li><span style=\"color: #000080;\">Translating Multiset Tree Automata into P systems<\/span> (2008). Jos\u00e9 M. Sempere.\u00a0 Proceedings of the \u00a09th Workshop on Membrane Computing (WMC9).\u00a0<span style=\"color: #ff0000;\">LNCS Vol.5391<\/span> pp 394-402. Springer.<\/li>\n<li><span style=\"color: #000080;\">Learning Regular Languages Using Nondeterministic Finite automata<\/span> (2008).\u00a0 Pedro Garc\u00eda, Manuel V\u00e1zquez de Parga, Gloria I. \u00c1lvarez, Jos\u00e9 Ruiz. Proceedings of the 13th International Conference CIAA 2008\u00a0 <span style=\"color: #ff0000;\">LNCS Vol. 5148<\/span> pp 92-101. Springer.<\/li>\n<\/ul>\n\n\n<p><\/p>\n\n\n\n<p><\/p>\n\n\n\n<p><\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>(Only journal publications including Springer&#8217;s Lecture Notes from 2008 on) 2026 Enhancing P Systems for Complex Biological Simulations. Aya Allah Elsayed,Raquel Cepri\u00e1n, Ahmed Ibrahem Hafez, Carlos Llorens and Jos\u00e9 M. Sempere. Applied Sciences 16, No. 2, 705. 2026. Inteligencia artificial generativa: los modelos fundacionales. Procesamiento del lenguaje natural y modelos de lenguaje grandes.\u00a0J. Mora-Delgado, L. [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-122","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/alfa.webs.upv.es\/index.php\/wp-json\/wp\/v2\/pages\/122","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/alfa.webs.upv.es\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/alfa.webs.upv.es\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/alfa.webs.upv.es\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/alfa.webs.upv.es\/index.php\/wp-json\/wp\/v2\/comments?post=122"}],"version-history":[{"count":56,"href":"https:\/\/alfa.webs.upv.es\/index.php\/wp-json\/wp\/v2\/pages\/122\/revisions"}],"predecessor-version":[{"id":365,"href":"https:\/\/alfa.webs.upv.es\/index.php\/wp-json\/wp\/v2\/pages\/122\/revisions\/365"}],"wp:attachment":[{"href":"https:\/\/alfa.webs.upv.es\/index.php\/wp-json\/wp\/v2\/media?parent=122"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}